species:   Rhsol
pid:       PID0509
parent:    Rhi-milR-85
paralog:   
locus:     KB317710.1:528516-528591
matures:   ['GGUGACUGUGGCUCUGAAGAGG', 'CUCUUGCUACUGCCGUUUGUUGCUC']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317710.1:528516-528591

2 out of bounds
13 alignments
6 proper strand
4 stranded perfect matches

       *************************         ****************************       
UGAUCGUGGUGGUGACUGUGGCUCUGAAGAGGCAGUCUCAGCACUCUUGCUACUGCCGUUUGUUGCUCCUGGAUUC
.((((..((.((((((..((((....(((((((.......)).)))))......))))...))))))))..)))).
----------GGUGACUGUGGCUCUGAAGAGG-------------------------------------------- l=22 a=0 c
-------------------------------------------CUCUUGCUACUGCCGUUUGUUGCUC-------- l=25 a=0 c*
---------UGGUGACUGUGGCUCUGAAGAGG-------------------------------------------- l=23 a=2 ma
-------------------------------------------CUCUUGCUACUGCCGUUUGUUGCUCC------- l=26 a=0 ma*

------------UGACUGUGGCUCUGAAGAGGCA------------------------------------------ l=22 a=1 
---------UGGUGACUGUGGCUCUGAAGAGG-------------------------------------------- l=23 a=2 (ma)
---------UGGUGACUGUGGCUCUGAAGAGa-------------------------------------------- l=23 a=1 
---------UGGUGACUGUGGCUCUGAAGAGGu------------------------------------------- l=24 a=1 
-----GUGGUGGUGACUGUGGC------------------------------------------------------ l=17 a=1 

mb-01011
ax-1001011
ku-01
ss-111110001100
fn-001
